STRINGSTRING
AAO54037.1 AAO54037.1 AAO53729.1 AAO53729.1 AAO57315.1 AAO57315.1 AAO57869.1 AAO57869.1 radC radC AAO55268.1 AAO55268.1 flgC flgC bioB bioB AAO54803.1 AAO54803.1 AAO54036.1 AAO54036.1 AAO55277.1 AAO55277.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54037.1Competence protein ComF, putative. (244 aa)    
Predicted Functional Partners:
AAO53729.1
DNA processing protein DprA, putative; Similar to SP:P43862, GB:L29642, and PID:461402; identified by sequence similarity; putative.
 
 
 0.901
AAO57315.1
DNA internalization-related competence protein ComEC/Rec2; Identified by match to PFAM protein family HMM PF00753.
 
  
 0.844
AAO57869.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR00252; Belongs to the UPF0102 family.
 
    0.764
radC
DNA repair protein RadC; Similar to SP:P25531; identified by sequence similarity; putative; Belongs to the UPF0758 family.
 
    0.745
AAO55268.1
Prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase family protein; See PMID:20190049 for expression data.
   
  
 0.631
flgC
Flagellar basal-body rod protein FlgC; See PMID:20190049 for expression data; similar to SP:P75935, GB:Z29327, and PID:441236; identified by sequence similarity; putative; Belongs to the flagella basal body rod proteins family.
   
   0.625
bioB
Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
     
 0.615
AAO54803.1
Sensory box protein/response regulator; See PMID:20190049 for expression data.
  
  
 0.608
AAO54036.1
Molybdate transport regulator ModE, putative.
       0.561
AAO55277.1
Competence protein, putative; See PMID:20190049 for expression data; similar to SP:P39694; identified by sequence similarity; putative.
  
  
 0.536
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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