STRINGSTRING
AAO54111.1 AAO54111.1 AAO54112.1 AAO54112.1 AAO55441.1 AAO55441.1 phaG-2 phaG-2 AAO54256.1 AAO54256.1 AAO58552.1 AAO58552.1 AAO58573.1 AAO58573.1 phaG-1 phaG-1 AAO54523.1 AAO54523.1 AAO55507.1 AAO55507.1 oprF oprF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54111.1Autotransporting lipase, GDSL family; See PMID:20190049 for expression data. (640 aa)    
Predicted Functional Partners:
AAO54112.1
Transcriptional regulator PrtN, putative; See PMID:20190049 for expression data.
     
 0.775
AAO55441.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.723
phaG-2
3-hydroxyacyl-CoA-acyl carrier protein transferase; Similar to GP:14669180, and SP:O85207; identified by sequence similarity; putative.
  
   
 0.721
AAO54256.1
Autotransporter, putative; Similar to GP:14670347, and SP:Q52657; identified by sequence similarity; putative.
 
  
 0.697
AAO58552.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00004.
  
     0.663
AAO58573.1
Polyhydroxyalkanoate granule-associated protein PhaF; See PMID:20190049 for expression data.
  
     0.655
phaG-1
3-hydroxyacyl-CoA-acyl carrier protein transferase; Caution: homology appears to extend beyond the upstream start site of this open reading frame; see PMID:20190049 for expression data; similar to GP:14669178, and SP:O85207; identified by sequence similarity; putative.
  
   
 0.650
AAO54523.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.
  
     0.636
AAO55507.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.617
oprF
Outer membrane porin OprF; See PMID:20190049 for expression data.
 
 
 
 0.617
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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