STRINGSTRING
AAO54277.1 AAO54277.1 AAO54278.1 AAO54278.1 AAO54279.1 AAO54279.1 AAO54276.1 AAO54276.1 AAO56641.1 AAO56641.1 AAO54275.1 AAO54275.1 AAO54015.1 AAO54015.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54277.1LrgA family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03788. (120 aa)    
Predicted Functional Partners:
AAO54278.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04172.
 
  
 0.990
AAO54279.1
ATP-dependent protease La domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02190.
 
     0.795
AAO54276.1
MaoC-like domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01575.
       0.547
AAO56641.1
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01816.
     
 0.439
AAO54275.1
MORN repeat family protein; See PMID:20190049 for expression data.
     
 0.433
AAO54015.1
Nucleotidyltransferase, putative; See PMID:20190049 for expression data.
  
     0.426
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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