STRINGSTRING
AAO54309.1 AAO54309.1 AAO54311.1 AAO54311.1 AAO54310.1 AAO54310.1 AAO54881.1 AAO54881.1 AAO54877.1 AAO54877.1 AAO54689.1 AAO54689.1 AAO54301.1 AAO54301.1 AAO54688.1 AAO54688.1 AAO54882.1 AAO54882.1 AAO54880.1 AAO54880.1 AAO54690.1 AAO54690.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54309.1ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (308 aa)    
Predicted Functional Partners:
AAO54311.1
ABC transporter, ATP-binding protein; Identified by match to TIGR protein family HMM TIGR00955.
 
 0.994
AAO54310.1
ABC transporter, permease protein, putative; Similar to GP:13937515; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
0.989
AAO54881.1
ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF03073; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.978
AAO54877.1
ABC transporter, ATP-binding protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative.
 
 0.976
AAO54689.1
ABC transporter, ATP-binding protein; Similar to GP:15023582; identified by sequence similarity; putative.
 
 0.975
AAO54301.1
Bmp family protein; Similar to GP:4581460; identified by sequence similarity; putative.
 
 
 0.968
AAO54688.1
Bmp family protein; Similar to GP:13937517; identified by sequence similarity; putative.
 
 
 0.967
AAO54882.1
Bmp family protein; Similar to SP:P04772, and PID:39533; identified by sequence similarity; putative.
 
 
 0.967
AAO54880.1
ABC transporter, permease protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.915
AAO54690.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.571
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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