STRINGSTRING
AAO54402.1 AAO54402.1 AAO54401.1 AAO54401.1 AAO54403.1 AAO54403.1 AAO54399.1 AAO54399.1 AAO54400.1 AAO54400.1 AAO54404.1 AAO54404.1 AAO54395.1 AAO54395.1 AAO54396.1 AAO54396.1 AAO54397.1 AAO54397.1 AAO54398.1 AAO54398.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54402.1Conserved hypothetical protein; Similar to GP:18077181, and GP:18077181; identified by sequence similarity; putative. (122 aa)    
Predicted Functional Partners:
AAO54401.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.767
AAO54403.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.751
AAO54399.1
ISPsy4, transposition helper protein; The annotation of this multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information; similar to GP:6009454, and GP:17865161; identified by sequence similarity; putative.
       0.611
AAO54400.1
ISPsy4, transposase; The annotation of this multicopy IS21 family element is based in part on an HMM match, the ISFinder database, and on positional information; similar to GP:11527916, and GP:17865160; identified by sequence similarity; putative.
       0.611
AAO54404.1
Conserved hypothetical protein; Also known as ORF20 (PMID12032338; Petnicki-Ocwieja et al 2002); similar to GP:18077183; identified by sequence similarity; putative.
       0.565
AAO54395.1
Conserved hypothetical protein; Similar to GP:16505346, and GP:16505346; identified by sequence similarity; putative.
       0.474
AAO54396.1
Conserved hypothetical protein; Similar to GP:18077178, and GP:16505345; identified by sequence similarity; putative.
       0.474
AAO54397.1
Conserved hypothetical protein; Similar to GP:18077179, and GP:16505344; identified by sequence similarity; putative.
       0.474
AAO54398.1
Conserved hypothetical protein; Similar to GP:18077180, and GP:16505343; identified by sequence similarity; putative.
       0.474
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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