STRINGSTRING
AAO54525.1 AAO54525.1 rimI rimI AAO54524.1 AAO54524.1 AAO54522.1 AAO54522.1 AAO58386.1 AAO58386.1 AAO58427.1 AAO58427.1 AAO56603.1 AAO56603.1 AAO58219.1 AAO58219.1 AAO54585.1 AAO54585.1 AAO55767.1 AAO55767.1 AAO55855.1 AAO55855.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54525.1Conserved hypothetical protein. (267 aa)    
Predicted Functional Partners:
rimI
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
 
     0.824
AAO54524.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
     0.794
AAO54522.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
 
     0.783
AAO58386.1
HAMP domain protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00672.
  
     0.771
AAO58427.1
Lipopolysaccharide core biosynthesis protein, putative; See PMID:20190049 for expression data; similar to GP:3482880; identified by sequence similarity; putative.
  
     0.766
AAO56603.1
Conserved domain protein.
  
     0.764
AAO58219.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.754
AAO54585.1
Outer membrane porin, OprD family.
  
     0.749
AAO55767.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.747
AAO55855.1
Outer membrane porin, OprD family.
  
     0.745
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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