Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO54262.1 | AAO54542.1 | PSPTO_0720 | PSPTO_1009 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01381. | Identified by match to PFAM protein family HMM PF00857. | 0.457 |
| AAO54542.1 | AAO54262.1 | PSPTO_1009 | PSPTO_0720 | Identified by match to PFAM protein family HMM PF00857. | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01381. | 0.457 |
| AAO54542.1 | AAO54544.1 | PSPTO_1009 | PSPTO_1011 | Identified by match to PFAM protein family HMM PF00857. | Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. | 0.473 |
| AAO54542.1 | AAO55615.1 | PSPTO_1009 | PSPTO_2097 | Identified by match to PFAM protein family HMM PF00857. | Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15140311; identified by sequence similarity; putative. | 0.531 |
| AAO54542.1 | AAO57933.1 | PSPTO_1009 | PSPTO_4484 | Identified by match to PFAM protein family HMM PF00857. | Conserved protein of unknown function; See PMID:20190049 for expression data. | 0.428 |
| AAO54542.1 | AAO57967.1 | PSPTO_1009 | PSPTO_4519 | Identified by match to PFAM protein family HMM PF00857. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.466 |
| AAO54542.1 | cmaA | PSPTO_1009 | PSPTO_4709 | Identified by match to PFAM protein family HMM PF00857. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.466 |
| AAO54542.1 | osmC | PSPTO_1009 | PSPTO_0152 | Identified by match to PFAM protein family HMM PF00857. | Osmotically inducible protein; See PMID:20190049 for expression data; similar to SP:P23929, GB:M16447, GB:X04882, SP:P09417, PID:181553, and PID:30819; identified by sequence similarity; putative. | 0.430 |
| AAO54542.1 | pchA | PSPTO_1009 | PSPTO_2595 | Identified by match to PFAM protein family HMM PF00857. | Isochorismate synthase; Involved in the biosynthesis of salicylate (based on the functions of neighboring loci) which is incorporated into the natural product yersiniabactin; see PMID:20190049 for expression data; similar to SP:P23973, and SP:Q51508; identified by sequence similarity; putative. | 0.511 |
| AAO54542.1 | phoD | PSPTO_1009 | PSPTO_1010 | Identified by match to PFAM protein family HMM PF00857. | Alkaline phosphatase D; Similar to GP:6469271, and SP:P42251; identified by sequence similarity; putative. | 0.473 |
| AAO54542.1 | wrbA | PSPTO_1009 | PSPTO_1686 | Identified by match to PFAM protein family HMM PF00857. | Trp repressor binding protein; Belongs to the WrbA family. | 0.511 |
| AAO54544.1 | AAO54542.1 | PSPTO_1011 | PSPTO_1009 | Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. | Identified by match to PFAM protein family HMM PF00857. | 0.473 |
| AAO54544.1 | AAO57967.1 | PSPTO_1011 | PSPTO_4519 | Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.607 |
| AAO54544.1 | cmaA | PSPTO_1011 | PSPTO_4709 | Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.660 |
| AAO54544.1 | phoD | PSPTO_1011 | PSPTO_1010 | Acetyltransferase, GNAT family; Identified by match to PFAM protein family HMM PF00583. | Alkaline phosphatase D; Similar to GP:6469271, and SP:P42251; identified by sequence similarity; putative. | 0.778 |
| AAO55615.1 | AAO54542.1 | PSPTO_2097 | PSPTO_1009 | Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15140311; identified by sequence similarity; putative. | Identified by match to PFAM protein family HMM PF00857. | 0.531 |
| AAO55615.1 | AAO57967.1 | PSPTO_2097 | PSPTO_4519 | Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15140311; identified by sequence similarity; putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.718 |
| AAO55615.1 | cmaA | PSPTO_2097 | PSPTO_4709 | Oxidoreductase, short chain dehydrogenase/reductase family; Similar to GP:15140311; identified by sequence similarity; putative. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.718 |
| AAO57933.1 | AAO54542.1 | PSPTO_4484 | PSPTO_1009 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Identified by match to PFAM protein family HMM PF00857. | 0.428 |
| AAO57933.1 | osmC | PSPTO_4484 | PSPTO_0152 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Osmotically inducible protein; See PMID:20190049 for expression data; similar to SP:P23929, GB:M16447, GB:X04882, SP:P09417, PID:181553, and PID:30819; identified by sequence similarity; putative. | 0.554 |
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