STRINGSTRING
dctP dctP AAO54581.1 AAO54581.1 dctM dctM AAO54583.1 AAO54583.1 AAO57690.1 AAO57690.1 udh udh AAO54578.1 AAO54578.1 AAO54579.1 AAO54579.1 garD garD
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctPTRAP dicarboxylate transporter, DctP subunit. (341 aa)    
Predicted Functional Partners:
AAO54581.1
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
  
 0.967
dctM
TRAP dicarboxylate transporter, DctM subunit.
 
  
 0.956
AAO54583.1
Senescence marker protein-30 family protein.
       0.634
AAO57690.1
Membrane protein TctA, putative; Similar to GP:11128404, and GP:11128404; identified by sequence similarity; putative.
  
     0.500
udh
Conserved hypothetical protein; Catalyzes the oxidation of beta-D-galacturonate and beta-D- glucuronate to galactarate and D-glucarate, respectively. Cannot use NADP(+) instead of NAD(+) as cosubstrate. Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.478
AAO54578.1
Conserved hypothetical protein.
       0.430
AAO54579.1
Membrane protein, putative.
       0.430
garD
D-galactarate dehydratase; See PMID:20190049 for expression data; similar to SP:P42240, and SP:P39829; identified by sequence similarity; putative.
 
     0.414
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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