STRINGSTRING
AAO54691.1 AAO54691.1 tolB tolB AAO54808.1 AAO54808.1 AAO55063.1 AAO55063.1 rpsF rpsF rpsL rpsL AAO54692.1 AAO54692.1 rpsN rpsN rpsB rpsB AAO57571.1 AAO57571.1 rplN rplN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54691.1ompA family protein; Similar to GP:5123490; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to GP:5123490, identified by sequence similarity, putative. (229 aa)    
Predicted Functional Partners:
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.624
AAO54808.1
TonB-dependent outer membrane heme receptor; See PMID:20190049 for expression data.
  
   
 0.476
AAO55063.1
Outer membrane protein OmpH, putative; See PMID:20190049 for expression data.
 
 
 0.469
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.445
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.432
AAO54692.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
  
 0.427
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 
 0.426
rpsB
Ribosomal protein S2; See PMID:20190049 for expression data; Belongs to the universal ribosomal protein uS2 family.
   
 
 0.422
AAO57571.1
Lipoprotein SlyB, putative; Similar to SP:Q53549; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:Q53549, identified by sequence similarity, putative.
  
  
 0.416
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.410
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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