STRINGSTRING
AAO54733.1 AAO54733.1 AAO54730.1 AAO54730.1 AAO54731.1 AAO54731.1 AAO54735.1 AAO54735.1 AAO54809.1 AAO54809.1 AAO53989.1 AAO53989.1 AAO55662.1 AAO55662.1 tonB-1 tonB-1 AAO54546.1 AAO54546.1 AAO55869.1 AAO55869.1 AAO53817.1 AAO53817.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54733.1TonB-dependent siderophore receptor, putative; Similar to GP:2981048; identified by sequence similarity; putative. (833 aa)    
Predicted Functional Partners:
AAO54730.1
RNA polymerase sigma-70 family protein; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.890
AAO54731.1
Regulatory protein, putative; See PMID:20190049 for expression data.
 
  
 0.719
AAO54735.1
Regulatory protein, putative; See PMID:20190049 for expression data.
 
  
 0.707
AAO54809.1
Regulatory protein, putative.
 
  
 0.701
AAO53989.1
Regulatory protein, putative.
 
  
 0.692
AAO55662.1
Iron-regulated membrane protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03929.
 
   
 0.692
tonB-1
tonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.683
AAO54546.1
tonB domain protein.
 
 
 0.663
AAO55869.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
  
 0.657
AAO53817.1
tonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.
 
 
 0.641
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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