STRINGSTRING
oprB oprB AAO58113.1 AAO58113.1 AAO54817.1 AAO54817.1 oprF oprF scrY scrY AAO56542.1 AAO56542.1 AAO54818.1 AAO54818.1 AAO54822.1 AAO54822.1 gltK gltK AAO54816.1 AAO54816.1 AAO57367.1 AAO57367.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprBPorin B; See PMID:20190049 for expression data. (453 aa)    
Predicted Functional Partners:
AAO58113.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15157428; identified by sequence similarity; putative.
  
     0.693
AAO54817.1
Glucose ABC transporter, permease protein, putative; See PMID:20190049 for expression data.
  
  
 0.661
oprF
Outer membrane porin OprF; See PMID:20190049 for expression data.
     
 0.641
scrY
Sucrose porin precursor; Similar to SP:P22340, GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; putative.
  
  
  0.636
AAO56542.1
Conserved domain protein; Similar to GB:X57522, GB:U07197, GB:U07198, GB:X57521, GB:L21204, GB:L21205, GB:L21206, GB:L21207, GB:L21208, GB:S70256, GB:S70266, GB:S70274, GB:S70260, SP:Q03518, PID:1054745, PID:34636, PID:36061, PID:463921, and PID:930122; identified by sequence similarity; putative.
  
  
  0.631
AAO54818.1
Glucose ABC transporter, permease protein, putative; See PMID:20190049 for expression data.
  
    0.570
AAO54822.1
Conserved hypothetical protein; Belongs to the glucose-6-phosphate 1-epimerase family.
       0.560
gltK
Glucose ABC transporter, ATP-binding protein; See PMID:20190049 for expression data; Belongs to the ABC transporter superfamily.
  
  
 0.556
AAO54816.1
Glucose ABC transporter, periplasmic glucose-binding protein, putative; See PMID:20190049 for expression data.
  
  
 0.540
AAO57367.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.538
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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