STRINGSTRING
AAO54876.1 AAO54876.1 AAO54883.1 AAO54883.1 AAO57700.1 AAO57700.1 amiE amiE AAO54882.1 AAO54882.1 AAO54875.1 AAO54875.1 AAO54881.1 AAO54881.1 AAO54877.1 AAO54877.1 AAO54880.1 AAO54880.1 AAO54874.1 AAO54874.1 AAO54878.1 AAO54878.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO54876.1Identified by match to PFAM protein family HMM PF00857. (225 aa)    
Predicted Functional Partners:
AAO54883.1
Identified by match to TIGR protein family HMM TIGR00132.
     0.959
AAO57700.1
Amidase family protein; Similar to GP:13022192; identified by sequence similarity; putative.
     0.922
amiE
Aliphatic amidase; Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide; Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.
 
 
 
 0.911
AAO54882.1
Bmp family protein; Similar to SP:P04772, and PID:39533; identified by sequence similarity; putative.
 
     0.887
AAO54875.1
Conserved hypothetical protein; Similar to GP:15981196; identified by sequence similarity; putative.
 
     0.886
AAO54881.1
ABC transporter, permease protein; Identified by match to PFAM protein family HMM PF03073; Belongs to the binding-protein-dependent transport system permease family.
 
     0.851
AAO54877.1
ABC transporter, ATP-binding protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative.
 
     0.849
AAO54880.1
ABC transporter, permease protein; Similar to SP:P09142, and PID:45593; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
     0.845
AAO54874.1
Transcriptional regulator, GntR family; Similar to GB:X77366, GB:U08853, PID:520471, and PID:541678; identified by sequence similarity; putative.
 
     0.828
AAO54878.1
Identified by match to PFAM protein family HMM PF00857.
 
    
0.812
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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