Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO55041.1 | AAO55042.1 | PSPTO_1521 | PSPTO_1522 | Conserved protein of unknown function; See PMID:20190049 for expression data. | rRNA large subunit methyltransferase A, putative. | 0.751 |
| AAO55041.1 | AAO55044.1 | PSPTO_1521 | PSPTO_1524 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Glycosyl transferase, group 2 family protein. | 0.599 |
| AAO55041.1 | dapE | PSPTO_1521 | PSPTO_1523 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.751 |
| AAO55041.1 | plsB | PSPTO_1521 | PSPTO_1520 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Glycerol-3-phosphate acyltransferase; See PMID:20190049 for expression data; Belongs to the GPAT/DAPAT family. | 0.496 |
| AAO55042.1 | AAO55041.1 | PSPTO_1522 | PSPTO_1521 | rRNA large subunit methyltransferase A, putative. | Conserved protein of unknown function; See PMID:20190049 for expression data. | 0.751 |
| AAO55042.1 | AAO55044.1 | PSPTO_1522 | PSPTO_1524 | rRNA large subunit methyltransferase A, putative. | Glycosyl transferase, group 2 family protein. | 0.578 |
| AAO55042.1 | dapE | PSPTO_1522 | PSPTO_1523 | rRNA large subunit methyltransferase A, putative. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.878 |
| AAO55042.1 | plsB | PSPTO_1522 | PSPTO_1520 | rRNA large subunit methyltransferase A, putative. | Glycerol-3-phosphate acyltransferase; See PMID:20190049 for expression data; Belongs to the GPAT/DAPAT family. | 0.471 |
| AAO55044.1 | AAO55041.1 | PSPTO_1524 | PSPTO_1521 | Glycosyl transferase, group 2 family protein. | Conserved protein of unknown function; See PMID:20190049 for expression data. | 0.599 |
| AAO55044.1 | AAO55042.1 | PSPTO_1524 | PSPTO_1522 | Glycosyl transferase, group 2 family protein. | rRNA large subunit methyltransferase A, putative. | 0.578 |
| AAO55044.1 | dapE | PSPTO_1524 | PSPTO_1523 | Glycosyl transferase, group 2 family protein. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.581 |
| AAO55051.1 | argD-2 | PSPTO_1531 | PSPTO_2618 | Aminotransferase, classes I and II; See PMID:20190049 for expression data. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.905 |
| AAO55051.1 | dapE | PSPTO_1531 | PSPTO_1523 | Aminotransferase, classes I and II; See PMID:20190049 for expression data. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.941 |
| argD-1 | dapE | PSPTO_1832 | PSPTO_1523 | Acetylornithine delta-aminotransferase; Identified by match to TIGR protein family HMM TIGR01822; see PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01822; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.574 |
| argD-2 | AAO55051.1 | PSPTO_2618 | PSPTO_1531 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Aminotransferase, classes I and II; See PMID:20190049 for expression data. | 0.905 |
| argD-2 | dapB | PSPTO_2618 | PSPTO_4503 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | 0.580 |
| argD-2 | dapE | PSPTO_2618 | PSPTO_1523 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.914 |
| argD-2 | dapF | PSPTO_2618 | PSPTO_0224 | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.407 |
| dapB | argD-2 | PSPTO_4503 | PSPTO_2618 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.580 |
| dapB | dapE | PSPTO_4503 | PSPTO_1523 | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.531 |
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