Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO54803.1 | AAO55044.1 | PSPTO_1278 | PSPTO_1524 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | Glycosyl transferase, group 2 family protein. | 0.621 |
| AAO54803.1 | AAO55257.1 | PSPTO_1278 | PSPTO_1737 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | Sensory box/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data. | 0.919 |
| AAO54803.1 | AAO56924.1 | PSPTO_1278 | PSPTO_3449 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | Capsular polysaccharide biosynthesis protein; Similar to SP:Q48460; identified by sequence similarity; putative. | 0.536 |
| AAO54803.1 | AAO57967.1 | PSPTO_1278 | PSPTO_4519 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.523 |
| AAO54803.1 | cfa6 | PSPTO_1278 | PSPTO_4686 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...] | 0.530 |
| AAO54803.1 | cmaA | PSPTO_1278 | PSPTO_4709 | Sensory box protein/response regulator; See PMID:20190049 for expression data. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.523 |
| AAO55041.1 | AAO55042.1 | PSPTO_1521 | PSPTO_1522 | Conserved protein of unknown function; See PMID:20190049 for expression data. | rRNA large subunit methyltransferase A, putative. | 0.751 |
| AAO55041.1 | AAO55044.1 | PSPTO_1521 | PSPTO_1524 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Glycosyl transferase, group 2 family protein. | 0.599 |
| AAO55041.1 | AAO55045.1 | PSPTO_1521 | PSPTO_1525 | Conserved protein of unknown function; See PMID:20190049 for expression data. | ThiF family protein; See PMID:20190049 for expression data. | 0.410 |
| AAO55041.1 | dapE | PSPTO_1521 | PSPTO_1523 | Conserved protein of unknown function; See PMID:20190049 for expression data. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.751 |
| AAO55042.1 | AAO55041.1 | PSPTO_1522 | PSPTO_1521 | rRNA large subunit methyltransferase A, putative. | Conserved protein of unknown function; See PMID:20190049 for expression data. | 0.751 |
| AAO55042.1 | AAO55044.1 | PSPTO_1522 | PSPTO_1524 | rRNA large subunit methyltransferase A, putative. | Glycosyl transferase, group 2 family protein. | 0.578 |
| AAO55042.1 | AAO55045.1 | PSPTO_1522 | PSPTO_1525 | rRNA large subunit methyltransferase A, putative. | ThiF family protein; See PMID:20190049 for expression data. | 0.426 |
| AAO55042.1 | AAO57967.1 | PSPTO_1522 | PSPTO_4519 | rRNA large subunit methyltransferase A, putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.533 |
| AAO55042.1 | cfa6 | PSPTO_1522 | PSPTO_4686 | rRNA large subunit methyltransferase A, putative. | Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...] | 0.452 |
| AAO55042.1 | cmaA | PSPTO_1522 | PSPTO_4709 | rRNA large subunit methyltransferase A, putative. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.587 |
| AAO55042.1 | dapE | PSPTO_1522 | PSPTO_1523 | rRNA large subunit methyltransferase A, putative. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.878 |
| AAO55044.1 | AAO54803.1 | PSPTO_1524 | PSPTO_1278 | Glycosyl transferase, group 2 family protein. | Sensory box protein/response regulator; See PMID:20190049 for expression data. | 0.621 |
| AAO55044.1 | AAO55041.1 | PSPTO_1524 | PSPTO_1521 | Glycosyl transferase, group 2 family protein. | Conserved protein of unknown function; See PMID:20190049 for expression data. | 0.599 |
| AAO55044.1 | AAO55042.1 | PSPTO_1524 | PSPTO_1522 | Glycosyl transferase, group 2 family protein. | rRNA large subunit methyltransferase A, putative. | 0.578 |
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