STRINGSTRING
AAO55103.1 AAO55103.1 AAO55104.1 AAO55104.1 AAO55105.1 AAO55105.1 rpoB rpoB rpoZ rpoZ rpoC rpoC rpoA rpoA AAO56116.1 AAO56116.1 AAO55106.1 AAO55106.1 AAO55375.1 AAO55375.1 AAO54490.1 AAO54490.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
AAO55103.1Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15073155; identified by sequence similarity; putative. (234 aa)    
Predicted Functional Partners:
AAO55104.1
Alcohol dehydrogenase, zinc-containing protein; Similar to GP:15162253; identified by sequence similarity; putative.
       0.778
AAO55105.1
Conserved hypothetical protein; Similar to GP:15157379; identified by sequence similarity; putative.
       0.499
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.478
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.467
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.467
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.467
AAO56116.1
Acetyltransferase, GNAT family; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01575.
 
    0.453
AAO55106.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.447
AAO55375.1
Transcriptional regulator, AraC family; Identified by match to TIGR protein family HMM TIGR01383.
  
     0.411
AAO54490.1
Phosphotransferase system, fructose-specific IIBC component; See PMID:20190049 for expression data.
      
 0.405
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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