STRINGSTRING
AAO55277.1 AAO55277.1 AAO57315.1 AAO57315.1 pilD pilD pilC pilC gspF gspF ssB ssB AAO53729.1 AAO53729.1 queF queF AAO54037.1 AAO54037.1 wbpM wbpM AAO56791.1 AAO56791.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AAO55277.1Competence protein, putative; See PMID:20190049 for expression data; similar to SP:P39694; identified by sequence similarity; putative. (109 aa)    
Predicted Functional Partners:
AAO57315.1
DNA internalization-related competence protein ComEC/Rec2; Identified by match to PFAM protein family HMM PF00753.
  
  
 0.712
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.698
pilC
Type IV pilus biogenesis protein PilC; See PMID:20190049 for expression data.
  
  
 0.573
gspF
General secretion pathway protein F; Similar to GB:J02854, SP:P19105, SP:P24844, PID:188586, and PID:829623; identified by sequence similarity; putative.
  
  
 0.573
ssB
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.563
AAO53729.1
DNA processing protein DprA, putative; Similar to SP:P43862, GB:L29642, and PID:461402; identified by sequence similarity; putative.
 
  
 0.544
queF
GTP cyclohydrolase I, putative; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.543
AAO54037.1
Competence protein ComF, putative.
  
  
 0.536
wbpM
Nucleotide sugar epimerase/dehydratase WbpM; See PMID:20190049 for expression data.
       0.525
AAO56791.1
General secretion pathway protein I, putative; See PMID:20190049 for expression data; similar to SP:P31738; identified by sequence similarity; putative.
  
  
 0.494
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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