STRINGSTRING
AAO55282.1 AAO55282.1 AAO55283.1 AAO55283.1 rpoC rpoC rpoZ rpoZ rpoB rpoB rpoA rpoA AAO55284.1 AAO55284.1 AAO55281.1 AAO55281.1 efp efp AAO55008.1 AAO55008.1 AAO57159.1 AAO57159.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
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Experiments
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Textmining
[Homology]
Score
AAO55282.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01462. (160 aa)    
Predicted Functional Partners:
AAO55283.1
Protein of unknown function; See PMID:20190049 for expression data.
       0.795
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.706
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.647
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.578
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.570
AAO55284.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.550
AAO55281.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.508
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
  
 0.473
AAO55008.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
    0.438
AAO57159.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to SP:P03753, and SP:P03753; identified by sequence similarity; putative.
  
     0.433
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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