AAO55658.1 protein (Pseudomonas syringae tomato)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AAO55658.1

Cation ABC transporter, periplasmic cation-binding protein; See PMID:20190049 for expression data; similar to SP:P31304; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family. (317 aa)

Predicted Functional Partners:

AAO55656.1

0.997

AAO55657.1

0.997

znuB

0.971

AAO55655.1

0.960

znuA

0.936

AAO55660.1

0.934

znuC

0.917

AAO56136.1

0.915

AAO55659.1

0.902

AAO55661.1

0.902

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO55655.1	AAO55656.1	PSPTO_2138	PSPTO_2139	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	0.975
AAO55655.1	AAO55657.1	PSPTO_2138	PSPTO_2140	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Cation ABC transporter, ATP-binding protein; See PMID:20190049 for expression data.	0.979
AAO55655.1	AAO55658.1	PSPTO_2138	PSPTO_2141	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Cation ABC transporter, periplasmic cation-binding protein; See PMID:20190049 for expression data; similar to SP:P31304; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family.	0.960
AAO55655.1	AAO55659.1	PSPTO_2138	PSPTO_2142	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.854
AAO55655.1	AAO55660.1	PSPTO_2138	PSPTO_2143	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.976
AAO55655.1	AAO55661.1	PSPTO_2138	PSPTO_2144	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.865
AAO55655.1	AAO56136.1	PSPTO_2138	PSPTO_2633	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Cation ABC transporter, ATP-binding protein.	0.503
AAO55655.1	znuB	PSPTO_2138	PSPTO_5265	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Zinc ABC transporter, permease protein.	0.507
AAO55655.1	znuC	PSPTO_2138	PSPTO_5266	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.530
AAO55656.1	AAO55655.1	PSPTO_2139	PSPTO_2138	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	0.975
AAO55656.1	AAO55657.1	PSPTO_2139	PSPTO_2140	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Cation ABC transporter, ATP-binding protein; See PMID:20190049 for expression data.	0.998
AAO55656.1	AAO55658.1	PSPTO_2139	PSPTO_2141	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Cation ABC transporter, periplasmic cation-binding protein; See PMID:20190049 for expression data; similar to SP:P31304; identified by sequence similarity; putative; Belongs to the bacterial solute-binding protein 9 family.	0.997
AAO55656.1	AAO55659.1	PSPTO_2139	PSPTO_2142	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.883
AAO55656.1	AAO55660.1	PSPTO_2139	PSPTO_2143	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.941
AAO55656.1	AAO55661.1	PSPTO_2139	PSPTO_2144	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.902
AAO55656.1	AAO56136.1	PSPTO_2139	PSPTO_2633	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Cation ABC transporter, ATP-binding protein.	0.881
AAO55656.1	znuA	PSPTO_2139	PSPTO_5268	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Zinc ABC transporter, periplasmic zinc-binding protein; See PMID:20190049 for expression data.	0.970
AAO55656.1	znuB	PSPTO_2139	PSPTO_5265	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Zinc ABC transporter, permease protein.	0.921
AAO55656.1	znuC	PSPTO_2139	PSPTO_5266	Cation ABC transporter, permease protein; See PMID:20190049 for expression data.	Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.962
AAO55657.1	AAO55655.1	PSPTO_2140	PSPTO_2138	Cation ABC transporter, ATP-binding protein; See PMID:20190049 for expression data.	ABC transporter, periplasmic substrate-binding protein, putative; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01297.	0.979

page 1 of 4

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About