Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO55654.1 | AAO55672.1 | PSPTO_2137 | PSPTO_2155 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | 0.465 |
| AAO55654.1 | AAO55673.1 | PSPTO_2137 | PSPTO_2156 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Renal dipeptidase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02776. | 0.459 |
| AAO55654.1 | AAO57967.1 | PSPTO_2137 | PSPTO_4519 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.999 |
| AAO55654.1 | pvdE | PSPTO_2137 | PSPTO_2153 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative. | 0.851 |
| AAO55654.1 | pvdQ | PSPTO_2137 | PSPTO_2161 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Penicillin amidase family protein; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) (By similarity). | 0.691 |
| AAO55654.1 | pvsA | PSPTO_2137 | PSPTO_2135 | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | Pyoverdine chromophore precursor synthetase; This synthetase is the first component (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore. This module initiates the chain and synthesizes the tripeptide L-glutamate:D-tyrosine:L-2-diaminobutyrate which is the constant feature of all pyoverdines and is subsequently converted to the fluorescent chromophore; see PMID:20190049 for expression data; similar to GP:440169; identified by sequence similarity; putative. | 0.951 |
| AAO55671.1 | AAO55672.1 | PSPTO_2154 | PSPTO_2155 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | 0.856 |
| AAO55671.1 | AAO55673.1 | PSPTO_2154 | PSPTO_2156 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Renal dipeptidase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02776. | 0.818 |
| AAO55671.1 | AAO55675.1 | PSPTO_2154 | PSPTO_2158 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Outer membrane efflux protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02321. | 0.490 |
| AAO55671.1 | AAO55677.1 | PSPTO_2154 | PSPTO_2160 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.426 |
| AAO55671.1 | AAO57967.1 | PSPTO_2154 | PSPTO_4519 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.567 |
| AAO55671.1 | macB1 | PSPTO_2154 | PSPTO_2159 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Macrolide ABC efflux protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. | 0.518 |
| AAO55671.1 | pvdE | PSPTO_2154 | PSPTO_2153 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Pyoverdine ABC transporter, ATP-binding/permease protein; See PMID:20190049 for expression data; similar to GP:466460, GB:X06325, SP:P09002, and PID:1333690; identified by sequence similarity; putative. | 0.809 |
| AAO55671.1 | pvdQ | PSPTO_2154 | PSPTO_2161 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Penicillin amidase family protein; Catalyzes the deacylation of acyl-homoserine lactone (AHL or acyl-HSL), releasing homoserine lactone (HSL) and the corresponding fatty acid. Possesses a specificity for the degradation of long-chain acyl-HSLs (side chains of 11 to 14 carbons in length) (By similarity). | 0.685 |
| AAO55671.1 | pvsA | PSPTO_2154 | PSPTO_2135 | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | Pyoverdine chromophore precursor synthetase; This synthetase is the first component (of five) in the biosynthesis of the P. syringae pyoverdine peptide which is subsequently modified by various enzymes to produce the mature pyoverdine siderophore. This module initiates the chain and synthesizes the tripeptide L-glutamate:D-tyrosine:L-2-diaminobutyrate which is the constant feature of all pyoverdines and is subsequently converted to the fluorescent chromophore; see PMID:20190049 for expression data; similar to GP:440169; identified by sequence similarity; putative. | 0.526 |
| AAO55672.1 | AAO55654.1 | PSPTO_2155 | PSPTO_2137 | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | MbtH-like protein; See PMID:20190049 for expression data; similar to GP:15159638; identified by sequence similarity; putative. | 0.465 |
| AAO55672.1 | AAO55671.1 | PSPTO_2155 | PSPTO_2154 | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03781. | 0.856 |
| AAO55672.1 | AAO55673.1 | PSPTO_2155 | PSPTO_2156 | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | Renal dipeptidase family protein; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02776. | 0.912 |
| AAO55672.1 | AAO55677.1 | PSPTO_2155 | PSPTO_2160 | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. | 0.487 |
| AAO55672.1 | AAO57967.1 | PSPTO_2155 | PSPTO_4519 | Aminotransferase, class V; See PMID:20190049 for expression data; similar to GP:13506638; identified by sequence similarity; putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.516 |
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