STRINGSTRING
oprF oprF tolB tolB AAO55063.1 AAO55063.1 scrY scrY ADD52989.1 ADD52989.1 gspG gspG ccoO ccoO AAO55812.1 AAO55812.1 oprB oprB AAO56542.1 AAO56542.1 AAO55811.1 AAO55811.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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oprFOuter membrane porin OprF; See PMID:20190049 for expression data. (344 aa)    
Predicted Functional Partners:
tolB
tolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.756
AAO55063.1
Outer membrane protein OmpH, putative; See PMID:20190049 for expression data.
 
 
 0.733
scrY
Sucrose porin precursor; Similar to SP:P22340, GB:M28826, GB:M22168, GB:M22169, GB:M22170, GB:M22171, GB:M22172, GB:M22173, GB:M14665, SP:P29016, PID:180050, PID:180056, and PID:180064; identified by sequence similarity; putative.
     
 0.707
ADD52989.1
Conserved protein of unknown function; PMID:20190049.
  
 
 0.684
gspG
General secretion pathway protein G; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01710.
      
 0.666
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02433.
  
 
 0.648
AAO55812.1
RNA polymerase sigma factor-70 sigW, putative; See PMID:20190049 for expression data; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.646
oprB
Porin B; See PMID:20190049 for expression data.
     
 0.641
AAO56542.1
Conserved domain protein; Similar to GB:X57522, GB:U07197, GB:U07198, GB:X57521, GB:L21204, GB:L21205, GB:L21206, GB:L21207, GB:L21208, GB:S70256, GB:S70266, GB:S70274, GB:S70260, SP:Q03518, PID:1054745, PID:34636, PID:36061, PID:463921, and PID:930122; identified by sequence similarity; putative.
     
 0.641
AAO55811.1
Membrane protein, putative; See PMID:20190049 for expression data.
 
   
 0.639
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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