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pcaQ pcaQ pobR pobR vanR vanR pcaG pcaG pcaH pcaH AAO55290.1 AAO55290.1 lrp lrp AAO58058.1 AAO58058.1 AAO56308.1 AAO56308.1 AAO56303.1 AAO56303.1 AAO57147.1 AAO57147.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
pcaQPca operon transcriptional activator PcaQ; See PMID:20190049 for expression data; similar to GP:10442737, and SP:P52668; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family. (309 aa)    
Predicted Functional Partners:
pobR
Transcriptional regulator PobR.
 
  
 0.939
vanR
Transcriptional regulator VanR; See PMID:20190049 for expression data.
  
   
 0.874
pcaG
Protocatechuate 3,4-dioxygenase, alpha subunit; See PMID:20190049 for expression data; similar to GP:10442739, and SP:P00436; identified by sequence similarity; putative.
 
   
 0.805
pcaH
Protocatechuate 3,4-dioxygenase, beta subunit; Similar to SP:P00437, GB:M30496, SP:P15374, and PID:340074; identified by sequence similarity; putative.
 
   
 0.790
AAO55290.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.708
lrp
Leucine-responsive regulatory protein; See PMID:20190049 for expression data; similar to SP:P37403; identified by sequence similarity; putative.
   
  
 0.701
AAO58058.1
Transcriptional regulator, LysR family; See PMID:20190049 for expression data; similar to GB:X61072, and PID:33512; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.696
AAO56308.1
Transcriptional regulator, LysR family; Similar to GP:15140147; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.674
AAO56303.1
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.
  
     0.672
AAO57147.1
Transcriptional regulator, LysR family; Similar to GP:15073695; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.671
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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