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rpmI rpmI rpsP rpsP rplT rplT rpsD rpsD rpmF rpmF rplK rplK rplJ rplJ rpsR rpsR rpsF rpsF rpmC rpmC rpmJ rpmJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmIRibosomal protein L35; See PMID:20190049 for expression data; Belongs to the bacterial ribosomal protein bL35 family. (64 aa)    
Predicted Functional Partners:
rpsP
Ribosomal protein S16; See PMID:20190049 for expression data; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.995
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (By similarity).
  
 
 0.995
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.987
rpmF
Ribosomal protein L32; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01783; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.987
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
 
 0.986
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
 
 0.986
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.986
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.986
rpmC
Ribosomal protein L29; See PMID:20190049 for expression data; see PMID:20190049 for expression data; Belongs to the universal ribosomal protein uL29 family.
   
 
 0.985
rpmJ
Ribosomal protein L36; See PMID:20190049 for expression data; similar to SP:P21194; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.985
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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