STRINGSTRING
exbB-3 exbB-3 exbD-3 exbD-3 tonB-2 tonB-2 exbD-2 exbD-2 AAO53815.1 AAO53815.1 tolR-1 tolR-1 tolR-2 tolR-2 exbD-1 exbD-1 AAO53817.1 AAO53817.1 AAO54216.1 AAO54216.1 pal pal
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB-3TonB system transport protein ExbB. (242 aa)    
Predicted Functional Partners:
exbD-3
TonB system transport protein ExbD.
 
 
 0.961
tonB-2
tonB protein; Identified by match to PFAM protein family HMM PF03544.
 
 
 0.900
exbD-2
TonB system transport protein ExbD; Similar to GP:3916255; identified by sequence similarity; putative.
 
 
 0.889
AAO53815.1
Biopolymer transport protein ExbD, putative; Identified by match to PFAM protein family HMM PF02472.
 
 
 0.888
tolR-1
tolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.870
tolR-2
tolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.866
exbD-1
TonB system transport protein ExbD; See PMID:20190049 for expression data; similar to SP:Q05606, GB:X60188, SP:P27361, SP:P28482, PID:1335009, PID:186696, and PID:31221; identified by sequence similarity; putative.
 
 
 0.860
AAO53817.1
tonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.
 
 
 0.782
AAO54216.1
tonB domain protein; Similar to SP:P02929; identified by sequence similarity; putative.
 
 
 0.781
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.677
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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