STRINGSTRING
AAO56048.1 AAO56048.1 AAO56049.1 AAO56049.1 AAO58841.1 AAO58841.1 AAO56050.1 AAO56050.1 AAO58854.1 AAO58854.1 AAO56051.1 AAO56051.1 AAO56052.1 AAO56052.1 hcp-1 hcp-1 AAO56057.1 AAO56057.1 hcp-2 hcp-2 AAO56058.1 AAO56058.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56048.1Conserved hypothetical protein; Identified by Glimmer2; putative. (166 aa)    
Predicted Functional Partners:
AAO56049.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.984
AAO58841.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
 
  
 0.965
AAO56050.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.954
AAO58854.1
Conserved protein of unknown function; Identified by Glimmer2; putative; see PMID:20190049 for expression data; identified by Glimmer.
 
 
 0.953
AAO56051.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.918
AAO56052.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.918
hcp-1
Secreted protein Hcp.
 
 
 0.915
AAO56057.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.915
hcp-2
Secreted protein Hcp; See PMID:20190049 for expression data.
 
 
 0.915
AAO56058.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.914
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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