STRINGSTRING
AAO56223.1 AAO56223.1 AAO56974.1 AAO56974.1 AAO56975.1 AAO56975.1 AAO56970.1 AAO56970.1 AAO56973.1 AAO56973.1 AAO56508.1 AAO56508.1 AAO56537.1 AAO56537.1 AAO56968.1 AAO56968.1 AAO56224.1 AAO56224.1 AAO56222.1 AAO56222.1 cfa6 cfa6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56223.1Oxidoreductase, Gfo/Idh/MocA family; Similar to GP:15158710; identified by sequence similarity; putative. (382 aa)    
Predicted Functional Partners:
AAO56974.1
iolE protein; Similar to SP:P42416, GB:X66079, SP:Q01892, and PID:36563; identified by sequence similarity; putative.
  
 0.917
AAO56975.1
iolC protein; This gene assignment is based partly on its location in a gene cluster; similar to SP:P42414; identified by sequence similarity; putative.
  
 0.890
AAO56970.1
iolD protein; Similar to SP:P42415; identified by sequence similarity; putative; Belongs to the TPP enzyme family.
 
  
 0.888
AAO56973.1
iolB protein; Similar to SP:P42413; identified by sequence similarity; putative.
 
  
 0.885
AAO56508.1
Conserved hypothetical protein; Similar to GP:7649627; identified by sequence similarity; putative.
  
 0.850
AAO56537.1
Conserved hypothetical protein; Similar to GP:12543186, and GP:12543186; identified by sequence similarity; putative; Belongs to the hyi family.
 
    0.678
AAO56968.1
iolH protein; See PMID:20190049 for expression data; similar to SP:P42418; identified by sequence similarity; putative.
 
  
 0.671
AAO56224.1
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to TIGR protein family HMM TIGR01831.
  
  
 0.590
AAO56222.1
Membrane protein, putative; Identified by match to PFAM protein family HMM PF04172.
       0.533
cfa6
Coronafacic acid polyketide synthase I; This gene is the first of two multimodular polyketide synthetases involved in the biosynthesis of coronafacic acid. This synthetase is proposed to receive CPC (2-carboxy-2-cyclopentenone) from an acyl carrier protein (cfa1), it then adds a buyrate group and then completely reduces the ketone of the (former) carboxylate group. The resulting product is then passed to the second polyketide synthetase (cfa7); similar to GP:13346874; identified by sequence similarity; putative; see PMID:20190049 for expression data; This gene is the first of two multi [...]
  
 
 0.532
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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