STRINGSTRING
AAO56263.1 AAO56263.1 AAO55741.1 AAO55741.1 AAO55529.1 AAO55529.1 AAO55013.1 AAO55013.1 AAO54524.1 AAO54524.1 AAO57549.1 AAO57549.1 AAO54522.1 AAO54522.1 AAO58382.1 AAO58382.1 AAO54523.1 AAO54523.1 AAO53710.1 AAO53710.1 AAO53925.1 AAO53925.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56263.1Autotransporter, putative; Similar to GP:15162153; identified by sequence similarity; putative. (927 aa)    
Predicted Functional Partners:
AAO55741.1
Autotransporter, putative; Similar to GP:5305639, and GP:5305639; identified by sequence similarity; putative.
  
   
 0.775
AAO55529.1
Autotransporter, putative; Similar to GP:5305639; identified by sequence similarity; putative.
  
   
 0.756
AAO55013.1
Leucine-rich repeat domain protein; Identified by match to PFAM protein family HMM PF02866.
  
     0.728
AAO54524.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.690
AAO57549.1
Leucine rich repeat domain protein; Identified by match to PFAM protein family HMM PF00560.
  
     0.686
AAO54522.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
     0.681
AAO58382.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.671
AAO54523.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.
  
     0.655
AAO53710.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:15978663; identified by sequence similarity; putative.
  
     0.633
AAO53925.1
Conserved protein of unknown function; See PMID:20190049 for expression data; similar to GP:606038; identified by sequence similarity; putative.
  
     0.577
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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