Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AAO53989.1 | AAO53990.1 | PSPTO_0445 | PSPTO_0446 | Regulatory protein, putative. | Membrane protein, putative; Identified by match to PFAM protein family HMM PF01309. | 0.646 |
| AAO53989.1 | AAO54735.1 | PSPTO_0445 | PSPTO_1208 | Regulatory protein, putative. | Regulatory protein, putative; See PMID:20190049 for expression data. | 0.917 |
| AAO53989.1 | AAO54738.1 | PSPTO_0445 | PSPTO_1211 | Regulatory protein, putative. | Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:5757617; identified by sequence similarity; putative. | 0.455 |
| AAO53989.1 | AAO55374.1 | PSPTO_0445 | PSPTO_1855 | Regulatory protein, putative. | TonB-dependent receptor, putative; See PMID:20190049 for expression data. | 0.416 |
| AAO53989.1 | AAO56109.1 | PSPTO_0445 | PSPTO_2605 | Regulatory protein, putative. | TonB-dependent siderophore receptor, putative; Presumed to have relevance to siderophore functions due to presence at one end of the yersiniabactin biosynthesis operon; similar to GP:557754, and SP:P46359; identified by sequence similarity; putative; see PMID:20190049 for expression data; Presumed to have relevance to siderophore functions due to presence at one end of the yersiniabactin biosynthesis operon., see PMID:20190049 for expression data; similar to GP:557754, and SP:P46359, identified by sequence similarity, putative. | 0.651 |
| AAO53989.1 | AAO56350.1 | PSPTO_0445 | PSPTO_2853 | Regulatory protein, putative. | TonB-dependent receptor, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01783. | 0.634 |
| AAO53989.1 | AAO57967.1 | PSPTO_0445 | PSPTO_4519 | Regulatory protein, putative. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.404 |
| AAO53989.1 | cmaA | PSPTO_0445 | PSPTO_4709 | Regulatory protein, putative. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.404 |
| AAO53990.1 | AAO53989.1 | PSPTO_0446 | PSPTO_0445 | Membrane protein, putative; Identified by match to PFAM protein family HMM PF01309. | Regulatory protein, putative. | 0.646 |
| AAO53990.1 | AAO56350.1 | PSPTO_0446 | PSPTO_2853 | Membrane protein, putative; Identified by match to PFAM protein family HMM PF01309. | TonB-dependent receptor, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01783. | 0.586 |
| AAO54735.1 | AAO53989.1 | PSPTO_1208 | PSPTO_0445 | Regulatory protein, putative; See PMID:20190049 for expression data. | Regulatory protein, putative. | 0.917 |
| AAO54735.1 | AAO54738.1 | PSPTO_1208 | PSPTO_1211 | Regulatory protein, putative; See PMID:20190049 for expression data. | Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:5757617; identified by sequence similarity; putative. | 0.715 |
| AAO54735.1 | AAO55374.1 | PSPTO_1208 | PSPTO_1855 | Regulatory protein, putative; See PMID:20190049 for expression data. | TonB-dependent receptor, putative; See PMID:20190049 for expression data. | 0.405 |
| AAO54735.1 | AAO56109.1 | PSPTO_1208 | PSPTO_2605 | Regulatory protein, putative; See PMID:20190049 for expression data. | TonB-dependent siderophore receptor, putative; Presumed to have relevance to siderophore functions due to presence at one end of the yersiniabactin biosynthesis operon; similar to GP:557754, and SP:P46359; identified by sequence similarity; putative; see PMID:20190049 for expression data; Presumed to have relevance to siderophore functions due to presence at one end of the yersiniabactin biosynthesis operon., see PMID:20190049 for expression data; similar to GP:557754, and SP:P46359, identified by sequence similarity, putative. | 0.651 |
| AAO54735.1 | AAO56350.1 | PSPTO_1208 | PSPTO_2853 | Regulatory protein, putative; See PMID:20190049 for expression data. | TonB-dependent receptor, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01783. | 0.669 |
| AAO54735.1 | AAO57967.1 | PSPTO_1208 | PSPTO_4519 | Regulatory protein, putative; See PMID:20190049 for expression data. | This gene is aparrently the terminal component of a non-ribosomal peptide synthetase (due to the presence of the terminal thioesterase domain) and is most likely associated with the previous gene which appears to be a initiating component. This gene contains three complete amino acid activation, thiolation and condensation domain modules and appears to be specific for glycine, an unidentified amino acid and serine according to the prediction algorithm at http://raynam.chm.jhu.edu/; nrps/index2.html. Taken together these two genes appear to direct the biosynthesis of a previously undesc [...] | 0.404 |
| AAO54735.1 | cmaA | PSPTO_1208 | PSPTO_4709 | Regulatory protein, putative; See PMID:20190049 for expression data. | Coronamic acid synthetase CmaA; Non-ribosomal peptide synthetase with adenylation and thiolation domains; reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis; see PMID: 14679222; see PMID:20190049 for expression data; non-ribosomal peptide synthetase with adenylation and thiolation domains, reacts with the AMP derivative of L-allo-isoleucine to produce an aminoacyl thiolester intermediate during coronamic acid biosynthesis, see PMID: 14679222. | 0.404 |
| AAO54738.1 | AAO53989.1 | PSPTO_1211 | PSPTO_0445 | Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:5757617; identified by sequence similarity; putative. | Regulatory protein, putative. | 0.455 |
| AAO54738.1 | AAO54735.1 | PSPTO_1211 | PSPTO_1208 | Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:5757617; identified by sequence similarity; putative. | Regulatory protein, putative; See PMID:20190049 for expression data. | 0.715 |
| AAO54738.1 | AAO54809.1 | PSPTO_1211 | PSPTO_1285 | Membrane protein, putative; See PMID:20190049 for expression data; similar to GP:5757617; identified by sequence similarity; putative. | Regulatory protein, putative. | 0.418 |
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