STRINGSTRING
AAO56444.1 AAO56444.1 AAO55544.1 AAO55544.1 AAO54694.1 AAO54694.1 AAO56261.1 AAO56261.1 AAO55743.1 AAO55743.1 AAO56267.1 AAO56267.1 fimA fimA AAO54799.1 AAO54799.1 AAO55887.1 AAO55887.1 AAO56833.1 AAO56833.1 AAO57443.1 AAO57443.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56444.1Glycosidase, putative; Similar to GP:6724082, and SP:O06458; identified by sequence similarity; putative. (687 aa)    
Predicted Functional Partners:
AAO55544.1
Ethanolamine permease family protein; Similar to GP:4378853; identified by sequence similarity; putative.
   
 0.788
AAO54694.1
Conserved hypothetical protein; Similar to GP:15024601; identified by sequence similarity; putative.
  
     0.621
AAO56261.1
Alpha-amylase family protein; Similar to GP:1536814; identified by sequence similarity; putative.
  
 
 0.579
AAO55743.1
Fimbrial protein, putative.
  
     0.561
AAO56267.1
Lipopolysaccharide core biosynthesis domain protein; See PMID:20190049 for expression data; similar to GP:147572, and SP:P27241; identified by sequence similarity; putative.
  
     0.549
fimA
Type I pilus biogensis protein FimA.
  
     0.482
AAO54799.1
Cold shock domain family protein; See PMID:20190049 for expression data.
    
 
 0.472
AAO55887.1
Cold shock domain family protein; See PMID:20190049 for expression data.
    
 
 0.472
AAO56833.1
Cold shock domain family protein; See PMID:20190049 for expression data.
    
 
 0.472
AAO57443.1
Cold shock domain family protein; See PMID:20190049 for expression data; similar to SP:P80415; identified by sequence similarity; putative.
    
 
 0.472
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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