STRINGSTRING
AAO56470.1 AAO56470.1 AAO53944.1 AAO53944.1 dehII dehII AAO58183.1 AAO58183.1 AAO58985.1 AAO58985.1 AAO56300.1 AAO56300.1 AAO57498.1 AAO57498.1 AAO55607.1 AAO55607.1 AAO56584.1 AAO56584.1 AAO57499.1 AAO57499.1 AAO55606.1 AAO55606.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56470.1Chitin-binding protein, putative; Identified by match to PFAM protein family HMM PF03067. (249 aa)    
Predicted Functional Partners:
AAO53944.1
Chitinase; Similar to GP:4587115, and GP:14578848; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.885
dehII
Haloacid dehalogenase, type II; See PMID:20190049 for expression data; similar to SP:Q52087; identified by sequence similarity; putative.
      
 0.823
AAO58183.1
Protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.685
AAO58985.1
Transposition protein, TnsD-related protein; This gene assignment is based in part on a multiple alignment; similar to GP:2653997, and SP:P13991; identified by sequence similarity; putative.
  
     0.639
AAO56300.1
Identified by match to PFAM protein family HMM PF01522.
  
   
 0.619
AAO57498.1
Host specificity protein J, internal deletion; Identified by match to PFAM protein family HMM PF03280.
  
     0.619
AAO55607.1
Host specificity protein J, internal deletion; Similar to SP:P03749; identified by sequence similarity; putative.
  
     0.618
AAO56584.1
Conserved domain protein; Identified by match to PFAM protein family HMM PF02498.
  
     0.498
AAO57499.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.495
AAO55606.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.486
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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