STRINGSTRING
AAO56673.1 AAO56673.1 AAO57136.1 AAO57136.1 AAO56671.1 AAO56671.1 AAO56672.1 AAO56672.1 AAO55399.1 AAO55399.1 pcD pcD AAO57114.1 AAO57114.1 AAO56674.1 AAO56674.1 AAO56669.1 AAO56669.1 AAO56675.1 AAO56675.1 AAO56670.1 AAO56670.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
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[Homology]
Score
AAO56673.1Peptidase, M20/M25/M40 family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01546. (426 aa)    
Predicted Functional Partners:
AAO57136.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
   
 0.875
AAO56671.1
Choline/ethanolamine kinase; Similar to GP:10567377; identified by sequence similarity; putative.
 
     0.830
AAO56672.1
Conserved hypothetical protein; Similar to GP:8918713; identified by sequence similarity; putative.
 
     0.830
AAO55399.1
Aldehyde dehydrogenase family protein; Similar to GP:13309884; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
     
  0.800
pcD
Piperideine-6-carboxylate dehydrogenase; Similar to GP:15076316, and GP:11990463; identified by sequence similarity; putative; Belongs to the aldehyde dehydrogenase family.
     
  0.800
AAO57114.1
Identified by match to TIGR protein family HMM TIGR01804.
     
  0.800
AAO56674.1
Transcriptional regulator, DeoR family; Similar to GP:10567380, and SP:P09392; identified by sequence similarity; putative.
       0.791
AAO56669.1
Sodium:solute symporter family protein; Similar to GB:L18881, GB:Z35446, GB:Z35447, GB:Z35448, GB:Z35450, GB:Z35454, SP:P48633, PID:408802, PID:516461, PID:516463, PID:516465, PID:516467, and PID:516469; identified by sequence similarity; putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.620
AAO56675.1
Identified by match to TIGR protein family HMM TIGR00132.
     
 0.596
AAO56670.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.506
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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