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tliF tliF tliE tliE tliD tliD AAO56810.1 AAO56810.1 macB1 macB1 syfD syfD AAO58985.1 AAO58985.1 AAO57498.1 AAO57498.1 AAO55607.1 AAO55607.1 AAO57217.1 AAO57217.1 AAO57499.1 AAO57499.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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tliFABC transporter, permease protein; See PMID:20190049 for expression data. (456 aa)    
Predicted Functional Partners:
tliE
ABC transporter, periplasmic substrate-binding protein; See PMID:20190049 for expression data.
 
 
 0.949
tliD
ABC transporter, ATP-binding protein; See PMID:20190049 for expression data.
 
  
 0.803
AAO56810.1
Alkaline metalloendoprotease; Similar to GP:4063015; identified by sequence similarity; putative.
 
  
 0.730
macB1
Macrolide ABC efflux protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.643
syfD
Syringafactin efflux protein SyfD; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.643
AAO58985.1
Transposition protein, TnsD-related protein; This gene assignment is based in part on a multiple alignment; similar to GP:2653997, and SP:P13991; identified by sequence similarity; putative.
  
     0.572
AAO57498.1
Host specificity protein J, internal deletion; Identified by match to PFAM protein family HMM PF03280.
  
     0.569
AAO55607.1
Host specificity protein J, internal deletion; Similar to SP:P03749; identified by sequence similarity; putative.
  
     0.567
AAO57217.1
Multidrug resistance protein.
  
 
 0.553
AAO57499.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.519
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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