STRINGSTRING
AAO56833.1 AAO56833.1 fliC fliC tuf tuf clpS clpS clpA clpA rmf rmf AAO56444.1 AAO56444.1 dnaJ dnaJ AAO54732.1 AAO54732.1 rpsL rpsL rpmJ rpmJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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AAO56833.1Cold shock domain family protein; See PMID:20190049 for expression data. (89 aa)    
Predicted Functional Partners:
fliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.732
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.680
clpS
Conserved protein of unknown function; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
  
  
 0.656
clpA
ATP-dependent clp protease, ATP-binding subunit ClpA; See PMID:20190049 for expression data; Belongs to the ClpA/ClpB family.
  
  
 0.645
rmf
Ribosome modulation factor-related protein; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
  
 0.553
AAO56444.1
Glycosidase, putative; Similar to GP:6724082, and SP:O06458; identified by sequence similarity; putative.
    
 
 0.472
dnaJ
dnaJ protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and Gr [...]
    
 
 0.456
AAO54732.1
Ribosomal subunit interface protein, putative; Identified by match to PFAM protein family HMM PF02482; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02482.
  
  
 0.454
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.449
rpmJ
Ribosomal protein L36; See PMID:20190049 for expression data; similar to SP:P21194; identified by sequence similarity; putative; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.429
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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