STRINGSTRING
AAO56871.1 AAO56871.1 AAO56870.1 AAO56870.1 AAO56869.1 AAO56869.1 AAO56873.1 AAO56873.1 AAO56874.1 AAO56874.1 AAO56868.1 AAO56868.1 AAO56881.1 AAO56881.1 AAO56879.1 AAO56879.1 AAO56886.1 AAO56886.1 AAO56885.1 AAO56885.1 clpP-1 clpP-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO56871.1Tail tape measure protein; Identified by match to TIGR protein family HMM TIGR01760. (916 aa)    
Predicted Functional Partners:
AAO56870.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.920
AAO56869.1
Tail protein X.
 
    0.919
AAO56873.1
Major tail tube protein; Similar to GP:5725163; identified by sequence similarity; putative.
 
  
 0.902
AAO56874.1
Major tail sheath protein; Similar to GP:514392, and SP:P22501; identified by sequence similarity; putative.
 
  
 0.900
AAO56868.1
Tail protein D; Similar to GP:5725169; identified by sequence similarity; putative.
 
  
 0.899
AAO56881.1
Baseplate assembly protein V; Similar to SP:P31340; identified by sequence similarity; putative.
 
  
 0.869
AAO56879.1
Baseplate assembly protein W; Similar to GP:6723254; identified by sequence similarity; putative.
 
    0.856
AAO56886.1
Conserved hypothetical protein; Similar to GP:17427871; identified by sequence similarity; putative.
 
  
 0.855
AAO56885.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.825
clpP-1
ATP-dependent Clp protease, proteolytic subunit ClpP; Identified by match to PFAM protein family HMM PF00574.
 
     0.801
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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