STRINGSTRING
AAO57079.1 AAO57079.1 AAO58530.1 AAO58530.1 algG algG algK algK AAO57793.1 AAO57793.1 algL algL AAO57771.1 AAO57771.1 algX algX AAO54256.1 AAO54256.1 AAO55366.1 AAO55366.1 AAO57580.1 AAO57580.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO57079.1Lyase, putative; See PMID:20190049 for expression data; similar to SP:Q59478; identified by sequence similarity; putative. (222 aa)    
Predicted Functional Partners:
AAO58530.1
Membrane protein, putative; Similar to GP:15020693; identified by sequence similarity; putative.
  
     0.747
algG
Alginate biosynthesis protein AlgG; Catalyzes the epimerization of beta-D-mannuronate to alpha-L- guluronate during the synthesis of the linear polysaccharide alginate. In addition, is part of a periplasmic protein complex that protects alginate from degradation by AlgL by channeling the newly formed alginate polymer through a scaffold that transfers the alginate polymer through the periplasmic space to the outer membrane secretin AlgE (By similarity).
 
  
 0.743
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
 
  
 0.741
AAO57793.1
Insecticidal toxin protein, putative; Identified by match to PFAM protein family HMM PF03534.
  
    0.729
algL
Alginate lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
  
   
 0.702
AAO57771.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.696
algX
Alginate biosynthesis protein AlgX; Plays two roles in the biosynthesis of the exopolysaccharide alginate: protects alginate from degradation as the polymer traverses the periplasm, and also plays a role in its O-acetylation. Probably has acetyltransferase activity in vivo (By similarity).
  
    0.690
AAO54256.1
Autotransporter, putative; Similar to GP:14670347, and SP:Q52657; identified by sequence similarity; putative.
 
  
 0.639
AAO55366.1
Transcriptional repressor, putative; See PMID:20190049 for expression data; similar to GP:6759952; identified by sequence similarity; putative.
  
     0.626
AAO57580.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF01391.
  
     0.592
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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