AAO57140.1 protein (Pseudomonas syringae tomato)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AAO57140.1

Conserved hypothetical protein; Similar to GP:13937484, and GP:13937484; identified by sequence similarity; putative. (261 aa)

Predicted Functional Partners:

AAO55542.1

0.629

AAO54523.1

0.594

AAO54524.1

0.574

AAO54522.1

0.573

AAO55007.1

0.570

AAO57139.1

0.510

AAO58977.1

0.499

AAO56283.1

0.489

AAO57374.1

0.447

AAO58382.1

0.414

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO54522.1	AAO54523.1	PSPTO_0988	PSPTO_0989	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	0.960
AAO54522.1	AAO54524.1	PSPTO_0988	PSPTO_0990	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.951
AAO54522.1	AAO55007.1	PSPTO_0988	PSPTO_1486	Conserved protein of unknown function; See PMID:20190049 for expression data.	Protein of unknown function; See PMID:20190049 for expression data.	0.721
AAO54522.1	AAO55542.1	PSPTO_0988	PSPTO_2024	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved domain protein; See PMID:20190049 for expression data; similar to GP:13236897; identified by sequence similarity; putative.	0.612
AAO54522.1	AAO56283.1	PSPTO_0988	PSPTO_2783	Conserved protein of unknown function; See PMID:20190049 for expression data.	Identified by match to PFAM protein family HMM PF00580.	0.823
AAO54522.1	AAO57140.1	PSPTO_0988	PSPTO_3671	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved hypothetical protein; Similar to GP:13937484, and GP:13937484; identified by sequence similarity; putative.	0.573
AAO54522.1	AAO57374.1	PSPTO_0988	PSPTO_3908	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.682
AAO54522.1	AAO58382.1	PSPTO_0988	PSPTO_4954	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.773
AAO54522.1	AAO58977.1	PSPTO_0988	PSPTO_5558	Conserved protein of unknown function; See PMID:20190049 for expression data.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.664
AAO54523.1	AAO54522.1	PSPTO_0989	PSPTO_0988	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved protein of unknown function; See PMID:20190049 for expression data.	0.960
AAO54523.1	AAO54524.1	PSPTO_0989	PSPTO_0990	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.961
AAO54523.1	AAO55007.1	PSPTO_0989	PSPTO_1486	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Protein of unknown function; See PMID:20190049 for expression data.	0.717
AAO54523.1	AAO55542.1	PSPTO_0989	PSPTO_2024	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved domain protein; See PMID:20190049 for expression data; similar to GP:13236897; identified by sequence similarity; putative.	0.666
AAO54523.1	AAO56283.1	PSPTO_0989	PSPTO_2783	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Identified by match to PFAM protein family HMM PF00580.	0.767
AAO54523.1	AAO57140.1	PSPTO_0989	PSPTO_3671	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved hypothetical protein; Similar to GP:13937484, and GP:13937484; identified by sequence similarity; putative.	0.594
AAO54523.1	AAO57374.1	PSPTO_0989	PSPTO_3908	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.666
AAO54523.1	AAO58382.1	PSPTO_0989	PSPTO_4954	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	0.771
AAO54523.1	AAO58977.1	PSPTO_0989	PSPTO_5558	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.642
AAO54524.1	AAO54522.1	PSPTO_0990	PSPTO_0988	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	Conserved protein of unknown function; See PMID:20190049 for expression data.	0.951
AAO54524.1	AAO54523.1	PSPTO_0990	PSPTO_0989	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.	Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.	0.961

page 1 of 5

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2023

Credits

Access

Info

About