STRINGSTRING
AAO57597.1 AAO57597.1 AAO57598.1 AAO57598.1 AAO57590.1 AAO57590.1 AAO57591.1 AAO57591.1 nnrD nnrD AAO56939.1 AAO56939.1 AAO56128.1 AAO56128.1 mutM mutM AAO57595.1 AAO57595.1 radA radA AAO56468.1 AAO56468.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
AAO57597.1Helicase domain protein; Similar to GP:14025425; identified by sequence similarity; putative. (836 aa)    
Predicted Functional Partners:
AAO57598.1
Conserved hypothetical protein; Identified by match to TIGR protein family HMM TIGR00024.
 
    0.956
AAO57590.1
Conserved hypothetical protein; Similar to GP:15155824; identified by sequence similarity; putative.
 
    0.836
AAO57591.1
DNA ligase, ATP-dependent; Similar to GP:15155825; identified by sequence similarity; putative.
 
    0.835
nnrD
YjeF-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...]
 
  
 0.573
AAO56939.1
DNA ligase, ATP-dependent, putative; Similar to GP:15158571; identified by sequence similarity; putative.
 
    0.544
AAO56128.1
Conserved hypothetical protein; Similar to GP:5918205, and GP:5918205; identified by sequence similarity; putative.
 
     0.524
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
  
  
 0.506
AAO57595.1
Conserved hypothetical protein; Similar to GP:15073237; identified by sequence similarity; putative.
       0.420
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
   
    0.420
AAO56468.1
DNA topoisomerase, type I, putative; Identified by match to PFAM protein family HMM PF01028.
  
     0.414
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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