STRINGSTRING
AAO57632.1 AAO57632.1 AAO57631.1 AAO57631.1 rpoN rpoN AAO57742.1 AAO57742.1 AAO58820.1 AAO58820.1 AAO57629.1 AAO57629.1 AAO57628.1 AAO57628.1 AAO57630.1 AAO57630.1 AAO56678.1 AAO56678.1 AAO58442.1 AAO58442.1 ntrB ntrB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO57632.1Sigma-54 dependent transcriptional regulator/response regulator; See PMID:20190049 for expression data. (442 aa)    
Predicted Functional Partners:
AAO57631.1
Sensor histidine kinase; See PMID:20190049 for expression data.
 0.991
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.761
AAO57742.1
Sensor histidine kinase.
 
 0.681
AAO58820.1
Sensor histidine kinase.
 
 0.637
AAO57629.1
Amino acid ABC transporter, permease protein; See PMID:20190049 for expression data.
     
 0.595
AAO57628.1
Amino acid ABC transporter, permease protein; See PMID:20190049 for expression data.
     
 0.590
AAO57630.1
Amino acid ABC transporter, ATP-binding protein; See PMID:20190049 for expression data.
  
    0.582
AAO56678.1
Sensor histidine kinase; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00512.
 
 
 0.552
AAO58442.1
Response regulator/sensory box/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data.
  
 
0.552
ntrB
Nitrogen regulation protein NtrB.
 
 0.541
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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