STRINGSTRING
bglX bglX AAO56655.1 AAO56655.1 AAO56796.1 AAO56796.1 AAO57163.1 AAO57163.1 AAO54419.1 AAO54419.1 lsc-1 lsc-1 lsc-2 lsc-2 AAO57742.1 AAO57742.1 AAO57743.1 AAO57743.1 xylB xylB xylA xylA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglXBeta-glucosidase; Similar to SP:P33363, SP:P17447, GB:X52905, PID:48716, GB:U00096, PID:1657512, and PID:1786506; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P33363, SP:P17447, GB:X52905, PID:48716, GB:U00096, PID:1657512, and PID:1786506, identified by sequence similarity, putative; Belongs to the glycosyl hydrolase 3 family. (765 aa)    
Predicted Functional Partners:
AAO56655.1
Glycosyl hydrolase, family 3; Similar to GP:2952030; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.929
AAO56796.1
Beta-glucosidase; Similar to GP:2952030, and SP:P27034; identified by sequence similarity; putative.
  
  
 
0.929
AAO57163.1
Glycosyl hydrolase, family 3; Similar to GP:2952030; identified by sequence similarity; putative.
  
  
 
0.928
AAO54419.1
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
  
 0.912
lsc-1
Levansucrase; Similar to SP:O68609, and SP:O68609; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:O68609, and SP:O68609, identified by sequence similarity, putative; Belongs to the glycosyl hydrolase 68 family.
     
  0.900
lsc-2
Levansucrase; Similar to GP:13936822, and SP:O68609; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 68 family.
     
  0.900
AAO57742.1
Sensor histidine kinase.
       0.579
AAO57743.1
Sigma-54 dependent transcriptional regulator/response regulator; See PMID:20190049 for expression data.
       0.570
xylB
Xylulokinase; Identified by match to PFAM protein family HMM PF02782; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF02782.
 
  
 0.527
xylA
Xylose isomerase; Similar to GP:43314; identified by sequence similarity; putative; Belongs to the xylose isomerase family.
     
 0.426
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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