STRINGSTRING
AAO57743.1 AAO57743.1 AAO57742.1 AAO57742.1 AAO58820.1 AAO58820.1 AAO58821.1 AAO58821.1 rpoN rpoN AAO57631.1 AAO57631.1 AAO57744.1 AAO57744.1 ntrB ntrB bglX bglX AAO56678.1 AAO56678.1 AAO58442.1 AAO58442.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
AAO57743.1Sigma-54 dependent transcriptional regulator/response regulator; See PMID:20190049 for expression data. (444 aa)    
Predicted Functional Partners:
AAO57742.1
Sensor histidine kinase.
 0.992
AAO58820.1
Sensor histidine kinase.
 0.965
AAO58821.1
Sigma-54 dependent transcriptional regulator/response regulator; See PMID:20190049 for expression data.
  
  
 
0.904
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.758
AAO57631.1
Sensor histidine kinase; See PMID:20190049 for expression data.
 
 0.626
AAO57744.1
Sensory box histidine kinase/response regulator; See PMID:20190049 for expression data.
 
 
0.615
ntrB
Nitrogen regulation protein NtrB.
 
 0.575
bglX
Beta-glucosidase; Similar to SP:P33363, SP:P17447, GB:X52905, PID:48716, GB:U00096, PID:1657512, and PID:1786506; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P33363, SP:P17447, GB:X52905, PID:48716, GB:U00096, PID:1657512, and PID:1786506, identified by sequence similarity, putative; Belongs to the glycosyl hydrolase 3 family.
       0.570
AAO56678.1
Sensor histidine kinase; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00512.
 
 
 0.554
AAO58442.1
Response regulator/sensory box/GGDEF domain/EAL domain protein; See PMID:20190049 for expression data.
  
 
 0.552
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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