STRINGSTRING
AAO58219.1 AAO58219.1 AAO58220.1 AAO58220.1 AAO54525.1 AAO54525.1 AAO58744.1 AAO58744.1 AAO54585.1 AAO54585.1 AAO55855.1 AAO55855.1 AAO56603.1 AAO56603.1 oprE oprE AAO58427.1 AAO58427.1 AAO58402.1 AAO58402.1 AAO53913.1 AAO53913.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
AAO58219.1Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer. (139 aa)    
Predicted Functional Partners:
AAO58220.1
Cation efflux family protein; See PMID:20190049 for expression data; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.800
AAO54525.1
Conserved hypothetical protein.
  
     0.754
AAO58744.1
Outer membrane porin, OprD family; Identified by match to PFAM protein family HMM PF03573; see PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF03573.
  
     0.718
AAO54585.1
Outer membrane porin, OprD family.
  
     0.694
AAO55855.1
Outer membrane porin, OprD family.
  
     0.694
AAO56603.1
Conserved domain protein.
  
     0.692
oprE
Outer membrane porin OprE; Identified by match to PFAM protein family HMM PF03573.
  
     0.651
AAO58427.1
Lipopolysaccharide core biosynthesis protein, putative; See PMID:20190049 for expression data; similar to GP:3482880; identified by sequence similarity; putative.
  
     0.651
AAO58402.1
Lipoprotein, putative.
  
     0.629
AAO53913.1
Outer membrane porin, OprD family; Similar to GP:2645844, and SP:P32722; identified by sequence similarity; putative.
  
     0.604
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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