STRINGSTRING
hldE hldE gmhA gmhA AAO53740.1 AAO53740.1 rfaF rfaF waaC waaC msbA msbA AAO57897.1 AAO57897.1 waaG waaG AAO58414.1 AAO58414.1 AAO58420.1 AAO58420.1 kdsA kdsA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
hldELipopolysaccharide biosynthesis protein RfaE; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family. (474 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
 0.997
AAO53740.1
Histidinol-phosphate phosphatase family protein; See PMID:20190049 for expression data; similar to GP:11120073; identified by sequence similarity; putative.
 
  
 0.986
rfaF
ADP-heptose--LPS heptosyltransferase II; See PMID:20190049 for expression data; similar to SP:P37692, GB:U14003, SP:P39352, PID:537120, GB:U00096, and PID:1790730; identified by sequence similarity; putative.
 
  
 0.922
waaC
Lipopolysaccharide heptosyltransferase; See PMID:20190049 for expression data; similar to SP:P24173; identified by sequence similarity; putative.
 
  
 0.915
msbA
Lipid A ABC transporter, ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
   
 0.790
AAO57897.1
Sugar isomerase, KpsF/GutQ; See PMID:20190049 for expression data; similar to GP:9950693; identified by sequence similarity; putative.
 
   
 0.670
waaG
Lipopolysaccharide core biosynthesis protein WaaG; See PMID:20190049 for expression data; similar to GB:X55137; identified by sequence similarity; putative.
 
   
 0.669
AAO58414.1
Membrane protein, putative; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01770.
     
 0.610
AAO58420.1
Carbamoyltransferase family protein; See PMID:20190049 for expression data.
 
   
 0.593
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase; See PMID:20190049 for expression data; Belongs to the KdsA family.
 
   
 0.588
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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