AAO58458.1 protein (Pseudomonas syringae tomato)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AAO58458.1

Sensor histidine kinase/response regulator; See PMID:20190049 for expression data. (1987 aa)

Predicted Functional Partners:

AAO58457.1

0.997

AAO54570.1

0.995

pilI

0.995

pilJ

0.992

AAO54845.1

0.976

cheZ

0.976

AAO56999.1

0.976

AAO55445.1

0.973

pilH

0.971

AAO56213.1

0.970

Your Current Organism:

Pseudomonas syringae tomato

NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAO54570.1	AAO54845.1	PSPTO_1039	PSPTO_1323	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	0.933
AAO54570.1	AAO55445.1	PSPTO_1039	PSPTO_1927	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	0.963
AAO54570.1	AAO56213.1	PSPTO_1039	PSPTO_2712	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Sensor histidine kinase/response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01817.	0.790
AAO54570.1	AAO56999.1	PSPTO_1039	PSPTO_3524	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Chemotaxis protein CheV, putative; Similar to SP:P37599; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P37599, identified by sequence similarity, putative.	0.904
AAO54570.1	AAO58457.1	PSPTO_1039	PSPTO_5029	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Conserved protein of unknown function; See PMID:20190049 for expression data.	0.659
AAO54570.1	AAO58458.1	PSPTO_1039	PSPTO_5030	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Sensor histidine kinase/response regulator; See PMID:20190049 for expression data.	0.995
AAO54570.1	cheZ	PSPTO_1039	PSPTO_1981	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.619
AAO54570.1	pilI	PSPTO_1039	PSPTO_5032	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	Type IV pilus protein PilI; See PMID:20190049 for expression data.	0.659
AAO54845.1	AAO54570.1	PSPTO_1323	PSPTO_1039	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	0.933
AAO54845.1	AAO55445.1	PSPTO_1323	PSPTO_1927	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	0.965
AAO54845.1	AAO56213.1	PSPTO_1323	PSPTO_2712	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Sensor histidine kinase/response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01817.	0.885
AAO54845.1	AAO56999.1	PSPTO_1323	PSPTO_3524	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Chemotaxis protein CheV, putative; Similar to SP:P37599; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P37599, identified by sequence similarity, putative.	0.967
AAO54845.1	AAO58458.1	PSPTO_1323	PSPTO_5030	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Sensor histidine kinase/response regulator; See PMID:20190049 for expression data.	0.976
AAO54845.1	cheZ	PSPTO_1323	PSPTO_1981	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Chemotaxis protein CheZ; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).	0.935
AAO54845.1	pilI	PSPTO_1323	PSPTO_5032	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Type IV pilus protein PilI; See PMID:20190049 for expression data.	0.413
AAO54845.1	pilJ	PSPTO_1323	PSPTO_5031	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Type IV pilus biogenesis protein PilJ; See PMID:20190049 for expression data.	0.593
AAO55445.1	AAO54570.1	PSPTO_1927	PSPTO_1039	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01818.	0.963
AAO55445.1	AAO54845.1	PSPTO_1927	PSPTO_1323	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	0.965
AAO55445.1	AAO56213.1	PSPTO_1927	PSPTO_2712	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Sensor histidine kinase/response regulator; See PMID:20190049 for expression data; identified by match to TIGR protein family HMM TIGR01817.	0.885
AAO55445.1	AAO56999.1	PSPTO_1927	PSPTO_3524	Chemotaxis protein CheV, putative; See PMID:20190049 for expression data.	Chemotaxis protein CheV, putative; Similar to SP:P37599; identified by sequence similarity; putative; see PMID:20190049 for expression data; similar to SP:P37599, identified by sequence similarity, putative.	0.963

page 1 of 5

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About