STRINGSTRING
AAO58618.1 AAO58618.1 AAO58617.1 AAO58617.1 AAO56780.1 AAO56780.1 AAO54362.1 AAO54362.1 AAO58619.1 AAO58619.1 AAO55037.1 AAO55037.1 macB1 macB1 syfD syfD saxG saxG saxF saxF saxB-2 saxB-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
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[Homology]
Score
AAO58618.1Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (356 aa)    
Predicted Functional Partners:
AAO58617.1
AcrB/AcrD/AcrF family protein; See PMID:20190049 for expression data; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.969
AAO56780.1
AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.870
AAO54362.1
AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.864
AAO58619.1
Efflux transporter, RND family, MFP subunit; See PMID:20190049 for expression data; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
0.831
AAO55037.1
Conserved domain protein.
 
 
 0.826
macB1
Macrolide ABC efflux protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.795
syfD
Syringafactin efflux protein SyfD; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.795
saxG
Aliphatic isothiocyanate resistance protein SaxG; See PMID:21385714.
 
 
 0.730
saxF
Aliphatic isothiocyanate resistance protein SaxF; See PMID:21385714.
 
 
 0.719
saxB-2
Isothiocyanate resistance protein SaxB; See PMID:21385714; see PMID:20190049 for expression data.
 
 
 0.661
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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