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rubB rubB rubA rubA nirD nirD cysG cysG AAO58889.1 AAO58889.1 AAO54506.1 AAO54506.1 AAO57336.1 AAO57336.1 ubiC ubiC AAO58891.1 AAO58891.1 gltB gltB nasA nasA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Score
rubBRubredoxin reductase; See PMID:20190049 for expression data; Belongs to the FAD-dependent oxidoreductase family. (382 aa)    
Predicted Functional Partners:
rubA
Rubredoxin; See PMID:20190049 for expression data.
 
 0.996
nirD
Nitrite reductase [NAD(P)H], small subunit.
  
 
 0.652
cysG
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.619
AAO58889.1
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.618
AAO54506.1
Iron-sulfur cluster-binding protein, Rieske family; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF00355.
  
 
 0.617
AAO57336.1
Conserved domain protein; Similar to GP:2271505; identified by sequence similarity; putative.
  
 
 0.617
ubiC
Chorismate-pyruvate lyase, putative; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
 
     0.579
AAO58891.1
DNA-binding protein HU family; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
 0.556
gltB
Glutamate synthase, large subunit; See PMID:20190049 for expression data.
  
  
 0.544
nasA
Nitrate reductase; Similar to GP:15159397, and SP:Q06457; identified by sequence similarity; putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.536
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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