STRINGSTRING
AAO58977.1 AAO58977.1 AAO58978.1 AAO58978.1 AAO56261.1 AAO56261.1 AAO54522.1 AAO54522.1 AAO54524.1 AAO54524.1 AAO58979.1 AAO58979.1 AAO58980.1 AAO58980.1 AAO58981.1 AAO58981.1 AAO58982.1 AAO58982.1 AAO54523.1 AAO54523.1 AAO56738.1 AAO56738.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAO58977.1Conserved hypothetical protein; Identified by Glimmer2; putative. (483 aa)    
Predicted Functional Partners:
AAO58978.1
Conserved hypothetical protein; Belongs to the methyltransferase superfamily.
 
    0.917
AAO56261.1
Alpha-amylase family protein; Similar to GP:1536814; identified by sequence similarity; putative.
   
    0.668
AAO54522.1
Conserved protein of unknown function; See PMID:20190049 for expression data.
  
     0.664
AAO54524.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by Glimmer.
  
     0.659
AAO58979.1
TonB-dependent receptor; Identified by match to TIGR protein family HMM TIGR01783.
       0.648
AAO58980.1
Iron-compound ABC transporter, ATP-binding protein, putative; Similar to GP:11071207, and SP:P07821; identified by sequence similarity; putative.
       0.648
AAO58981.1
Iron compound ABC transporter, iron compound-binding protein; Similar to GP:14027559; identified by sequence similarity; putative.
       0.648
AAO58982.1
Hemin ABC transporter, permease protein, putative; Similar to GP:11071206, and GP:5006425; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.648
AAO54523.1
Conserved protein of unknown function; See PMID:20190049 for expression data; identified by match to PFAM protein family HMM PF04288.
  
     0.642
AAO56738.1
Acetyltransferase, GNAT family; Similar to SP:P06232, SP:P06233, GB:X04379, GB:Y00604, and PID:455350; identified by sequence similarity; putative.
  
     0.608
Your Current Organism:
Pseudomonas syringae tomato
NCBI taxonomy Id: 223283
Other names: P. syringae pv. tomato str. DC3000, Pseudomonas syringae DC3000, Pseudomonas syringae pv. tomato DC3000, Pseudomonas syringae pv. tomato str. ATCC BAA-871, Pseudomonas syringae pv. tomato str. DC3000
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