Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplM | rplS | Psefu_0779 | Psefu_1045 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.984 |
| rplM | rplU | Psefu_0779 | Psefu_0730 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.981 |
| rplM | rpmF | Psefu_0779 | Psefu_2732 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: pmy:Pmen_1625 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.973 |
| rplM | rpmH | Psefu_0779 | Psefu_4496 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: pmy:Pmen_4623 50S ribosomal protein L34P; PFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.963 |
| rplM | rpmI | Psefu_0779 | Psefu_2754 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: pen:PSEEN1965 50S ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.976 |
| rplM | rpsF | Psefu_0779 | Psefu_4097 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.975 |
| rplM | rpsO | Psefu_0779 | Psefu_3581 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.989 |
| rplM | rpsP | Psefu_0779 | Psefu_1042 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: pen:PSEEN4260 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.984 |
| rplM | rpsT | Psefu_0779 | Psefu_0736 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.978 |
| rplM | rpsU | Psefu_0779 | Psefu_3958 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: psa:PST_0714 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.970 |
| rplS | rplM | Psefu_1045 | Psefu_0779 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.984 |
| rplS | rplU | Psefu_1045 | Psefu_0730 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.988 |
| rplS | rpmF | Psefu_1045 | Psefu_2732 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: pmy:Pmen_1625 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.979 |
| rplS | rpmH | Psefu_1045 | Psefu_4496 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: pmy:Pmen_4623 50S ribosomal protein L34P; PFAM: Ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.962 |
| rplS | rpmI | Psefu_1045 | Psefu_2754 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: Ribosomal protein L35, non-mitochondrial; HAMAP: Ribosomal protein L35, non-mitochondrial; KEGG: pen:PSEEN1965 50S ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.973 |
| rplS | rpsF | Psefu_1045 | Psefu_4097 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.975 |
| rplS | rpsO | Psefu_1045 | Psefu_3581 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.985 |
| rplS | rpsP | Psefu_1045 | Psefu_1042 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: pen:PSEEN4260 30S ribosomal protein S16; PFAM: Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
| rplS | rpsT | Psefu_1045 | Psefu_0736 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.966 |
| rplS | rpsU | Psefu_1045 | Psefu_3958 | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: psa:PST_0714 30S ribosomal protein S21; PFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.971 |
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