STRINGSTRING
Plav_2986 Plav_2986 Plav_2985 Plav_2985 Plav_2987 Plav_2987 Plav_2984 Plav_2984 Plav_0425 Plav_0425 Plav_0286 Plav_0286 Plav_1066 Plav_1066 Plav_2983 Plav_2983 Plav_1964 Plav_1964 argG argG argH argH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2986TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_1257 amino acid ABC transporter, permease protein. (369 aa)    
Predicted Functional Partners:
Plav_2985
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1003 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
 
0.999
Plav_2987
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1116 ABC transporter related.
 0.999
Plav_2984
SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_3923 putative amino-acid ABC transporter, substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.997
Plav_0425
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.875
Plav_0286
Prephenate dehydratase; PFAM: extracellular solute-binding protein family 3; KEGG: pau:PA14_19140 cyclohexadienyl dehydratase; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.814
Plav_1066
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pcr:Pcryo_1086 substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.680
Plav_2983
TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mag:amb1294 cystathionine beta-lyase/cystathionine gamma-synthase.
  
  
 0.623
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
  
  
 0.613
argG
PFAM: argininosuccinate synthase; KEGG: rde:RD1_0417 argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.508
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: nha:Nham_3477 argininosuccinate lyase.
  
  
 0.495
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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