STRINGSTRING
Tgr7_1548 Tgr7_1548 pyrF pyrF Tgr7_1368 Tgr7_1368 lapB lapB Tgr7_0785 Tgr7_0785 Tgr7_1549 Tgr7_1549 Tgr7_1545 Tgr7_1545 ihfB ihfB Tgr7_0227 Tgr7_0227 Tgr7_0786 Tgr7_0786 Tgr7_3270 Tgr7_3270
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Coexpression
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Textmining
[Homology]
Score
Tgr7_1548TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: psa:PST_1407 hypothetical protein. (89 aa)    
Predicted Functional Partners:
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.625
Tgr7_1368
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.620
lapB
TPR repeat-containing protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
       0.595
Tgr7_0785
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.592
Tgr7_1549
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mca:MCA2203 UTP-glucose-1-phosphate uridylyltransferase.
       0.585
Tgr7_1545
KEGG: aeh:Mlg_0933 hypothetical protein.
       0.582
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
  
 0.531
Tgr7_0227
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: aeh:Mlg_2392 general secretion pathway protein F.
  
  
 0.463
Tgr7_0786
KEGG: mca:MCA2095 type IV pilin biogenesis protein PilC.
  
  
 0.463
Tgr7_3270
KEGG: pca:Pcar_0389 general secretory pathway protein F.
  
  
 0.463
Your Current Organism:
Thioalkalivibrio sulfidiphilus
NCBI taxonomy Id: 396588
Other names: T. sulfidiphilus HL-EbGr7, Thioalkalivibrio sp. HL-EbGR7, Thioalkalivibrio sulfidiphilus HL-EbGr7, Thioalkalivibrio sulfidiphilus str. HL-EbGr7, Thioalkalivibrio sulfidiphilus strain HL-EbGr7, Thioalkalivibrio sulfidophilus HL-EbGr7
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