STRINGSTRING
Smal_2393 Smal_2393 Smal_0238 Smal_0238 Smal_2561 Smal_2561 speA speA argH argH Smal_2394 Smal_2394 Smal_2392 Smal_2392 Smal_0087 Smal_0087 Smal_0864 Smal_0864 Smal_3235 Smal_3235 Smal_3847 Smal_3847
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smal_2393PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: psa:PST_2250 probable Orn/Arg/Lys decarboxylase. (762 aa)    
Predicted Functional Partners:
Smal_0238
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: xcv:XCV4102 arginase; Belongs to the arginase family.
    
 0.921
Smal_2561
Agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: pau:PA14_48450 putative peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
    
 0.921
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
     
 0.916
argH
KEGG: xom:XOO_2515 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase.
     
 0.831
Smal_2394
PFAM: amino acid permease-associated region; KEGG: bvi:Bcep1808_5439 arginine:agmatin antiporter.
 
  
 0.804
Smal_2392
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpp:lpp2043 hypothetical protein.
 
     0.740
Smal_0087
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV0089 MoxR-like ATPase.
   
 
 0.591
Smal_0864
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: xcv:XCV1134 MoxR-like ATPase.
   
 
 0.591
Smal_3235
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: xcb:XC_0936 methanol dehydrogenase regulatory protein.
   
 
 0.591
Smal_3847
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3320 ATPase associated with various cellular activities, AAA_3.
   
 
 0.591
Your Current Organism:
Stenotrophomonas maltophilia R5513
NCBI taxonomy Id: 391008
Other names: S. maltophilia R551-3, Stenotrophomonas maltophilia R551-3, Stenotrophomonas maltophilia str. R551-3, Stenotrophomonas maltophilia strain R551-3
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