STRINGSTRING
EEF59555.1 EEF59555.1 EEF59557.1 EEF59557.1 EEF59556.1 EEF59556.1 EEF59558.1 EEF59558.1 EEF60743.1 EEF60743.1 EEF57363.1 EEF57363.1 EEF59554.1 EEF59554.1 EEF59559.1 EEF59559.1 EEF61789.1 EEF61789.1 EEF59560.1 EEF59560.1 EEF59842.1 EEF59842.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEF59555.1TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pst:PSPTO_2481 TonB protein. (235 aa)    
Predicted Functional Partners:
EEF59557.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: min:Minf_2323 biopolymer transport protein.
 
   0.817
EEF59556.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: min:Minf_2325 biopolymer transport protein, MotA/TolQ/ExbB family.
 
   0.808
EEF59558.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: min:Minf_2323 biopolymer transport protein.
  
   0.788
EEF60743.1
KEGG: pna:Pnap_1783 20S proteasome, A and B subunits.
  
     0.747
EEF57363.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: dde:Dde_1600 receptor precursor-mostly Fe transport.
   
   0.723
EEF59554.1
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA4387 ferrichrome-iron receptor.
  
   0.706
EEF59559.1
KEGG: ptm:GSPATT00029381001 hypothetical protein.
       0.648
EEF61789.1
KEGG: ava:Ava_0314 signal transduction histidine kinase (STHK) with CheB and CheR activity; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
    
 0.494
EEF59560.1
Hypothetical protein.
       0.455
EEF59842.1
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cau:Caur_0952 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
    
  0.446
Your Current Organism:
Pedosphaera parvula
NCBI taxonomy Id: 320771
Other names: P. parvula Ellin514, Pedosphaera parvula Ellin514, Pedosphaera parvula str. Ellin514, Pedosphaera parvula strain Ellin514, bacterium Ellin514
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